{ "_id": "6a1eb065b25058d4daadb89f", "Package": "caROC", "Type": "Package", "Title": "Continuous Biomarker Evaluation with Adjustment of Covariates", "Version": "0.1.5", "Author": "Ziyi Li", "Maintainer": "Ziyi Li ", "Description": "Compute covariate-adjusted specificity at controlled\nsensitivity level, or covariate-adjusted sensitivity at\ncontrolled specificity level, or covariate-adjust receiver\noperating characteristic curve, or covariate-adjusted\nthresholds at controlled sensitivity/specificity level. All\nstatistics could also be computed for specific sub-populations\ngiven their covariate values. Methods are described in Ziyi Li,\nYijian Huang, Datta Patil, Martin G. Sanda (2021+) \"Covariate\nadjustment in continuous biomarker assessment\".", "License": "GPL-2", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-02 10:23:57 UTC", "User": "root" }, "Repository": "https://ziyili20.r-universe.dev", "Date/Publication": "2021-04-02 07:20:03 UTC", "RemoteUrl": "https://github.com/cran/caROC", "RemoteRef": "HEAD", "RemoteSha": "6c243aa38c14806fac04fefb5fb164e189fc920a", "MD5sum": "dc73245512f7f0bcdaaf440c20084aeb", "_user": "ziyili20", "_type": "src", "_file": "caROC_0.1.5.tar.gz", "_fileid": "5722e37f4299401965e57a7646c8dd2010ff3182c550fcb0dd8aab2adf37b3f2", "_filesize": 339730, "_sha256": "5722e37f4299401965e57a7646c8dd2010ff3182c550fcb0dd8aab2adf37b3f2", "_created": "2026-06-02T10:23:57.000Z", "_published": "2026-06-02T10:28:53.622Z", "_distro": "noble", "_jobs": [ { "job": 79050021474, "time": 133, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7355178861" }, { "job": 79050021527, "time": 128, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7355177318" }, { "job": 79050021568, "time": 154, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7355204944" }, { "job": 79050021562, "time": 170, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7355195442" }, { "job": 79049513362, "time": 188, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7355133296" }, { "job": 79050021570, "time": 94, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7355165765" }, { "job": 79050021551, "time": 96, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7355166374" }, { "job": 79050021581, "time": 88, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7355163781" }, { "job": 79050021559, "time": 88, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7355163597" } ], "_buildurl": "https://github.com/r-universe/ziyili20/actions/runs/26813549884", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/caROC", "_commit": { "id": "6c243aa38c14806fac04fefb5fb164e189fc920a", "author": "Ziyi Li ", "committer": "cran-robot ", "message": "version 0.1.5\n", "time": 1617348003 }, "_maintainer": { "name": "Ziyi Li", "email": "zli16@mdanderson.org", "login": "ziyili20", "description": "", "uuid": 24440640 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "quantreg", "role": "Depends" }, { "package": "RColorBrewer", "role": "Depends" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "ziyili20", "count": 1, "uuid": 24440640 } ], "_userbio": { "uuid": 24440640, "type": "user", "name": "ziyili20" }, "_downloads": { "count": 183, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/caROC" }, "_searchresults": 5, "_rbuild": "4.6.0", "_assets": [ "extra/caROC.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_realowner": "ziyili20", "_cranurl": false, "_releases": [ { "version": "0.1.5", "date": "2021-04-02" } ], "_exports": [ "caROC", "caROC_CB", "caThreshold", "plot_caROC", "plot_caROC_CB", "plot_sscaROC", "plot_sscaROC_CB", "sscaROC", "sscaROC_CB" ], "_help": [ { "page": "caROC", "title": "Covariate-adjusted ROC", "topics": [ "caROC" ] }, { "page": "caROC_CB", "title": "Get confidence band for covariate-adjusted ROC curve.", "topics": [ "caROC_CB" ] }, { "page": "caThreshold", "title": "Calculate covariate-adjusted threshold.", "topics": [ "caThreshold" ] }, { "page": "plot_caROC", "title": "Plot covariate-adjusted ROC.", "topics": [ "plot_caROC" ] }, { "page": "plot_caROC_CB", "title": "Plot confidence band of covariate-adjusted ROC.", "topics": [ "plot_caROC_CB" ] }, { "page": "plot_sscaROC", "title": "Plot covariate-adjusted ROC for specific subpopulations.", "topics": [ "plot_sscaROC" ] }, { "page": "plot_sscaROC_CB", "title": "Plot confidence band of covariate-adjusted ROC in specific subpopulations.", "topics": [ "plot_sscaROC_CB" ] }, { "page": "sscaROC", "title": "Covariate-adjusted continuous biomarker evaluations for specific population.", "topics": [ "sscaROC" ] }, { "page": "sscaROC_CB", "title": "Get confidence band for covariate-adjusted ROC curve for specified sub-population.", "topics": [ "sscaROC_CB" ] } ], "_rundeps": [ "lattice", "MASS", "Matrix", "MatrixModels", "quantreg", "RColorBrewer", "SparseM", "survival" ], "_vignettes": [ { "source": "caROC.Rmd", "filename": "caROC.html", "title": "Evaluate continuous biomarkers with caROC", "author": "Ziyi Li (zli16@mdanderson.org)", "engine": "knitr::rmarkdown", "headings": [ "Installation and quick start", "Install caROC", "How to get help for caROC", "Quick start on evaluating continuous biomarker with covariates adjusted", "Illustrating the usage of caROC in details", "1. Covariate-adjusted sensitivity at controlled specificity level (or the reverse)", "1.1 Compute pooled sensitivity at controlled specificed level", "1.2 Sub-population specific sensitivity at controlled specificity level", "2. Covariate-adjusted ROC curve", "2.1 Pooled ROC", "2.2 Sub-population specific ROC", "3. Threshold at controlled sensitivity/specificity for given covariate values" ], "created": "2021-04-02 07:20:03", "modified": "2021-04-02 07:20:03", "commits": 1 } ], "_score": 2, "_indexed": true, "_nocasepkg": "caroc", "_universes": [ "ziyili20" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.5", "date": "2026-06-02T10:25:57.000Z", "distro": "noble", "commit": "6c243aa38c14806fac04fefb5fb164e189fc920a", "fileid": "7591b5b00fcce225f32c3e672ad1e472627488f02155ec172c1b05ecf4d9baeb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ziyili20/actions/runs/26813549884" }, { "r": "4.6.0", "os": "linux", "version": "0.1.5", "date": "2026-06-02T10:25:55.000Z", "distro": "noble", "commit": "6c243aa38c14806fac04fefb5fb164e189fc920a", "fileid": "f396d589a354b5539e5e08b7f6a2c5bb15a90356a442e61ca2b11cc997aa4388", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ziyili20/actions/runs/26813549884" }, { "r": "4.5.3", "os": "mac", "version": "0.1.5", "date": "2026-06-02T10:27:31.000Z", "commit": "6c243aa38c14806fac04fefb5fb164e189fc920a", "fileid": "fa21b92e49de8c744da43c88013e796804636792edc3d4a06133217640217507", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ziyili20/actions/runs/26813549884" }, { "r": "4.6.0", "os": "mac", "version": "0.1.5", "date": "2026-06-02T10:26:52.000Z", "commit": "6c243aa38c14806fac04fefb5fb164e189fc920a", "fileid": "535825aa8b93a679dbc8f525bf99c22f3079320cd09b95364650e4353788b714", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ziyili20/actions/runs/26813549884" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.5", "date": "2026-06-02T10:25:53.000Z", "commit": "6c243aa38c14806fac04fefb5fb164e189fc920a", "fileid": "2b39cf88b951e172fc3c60c9838460aa62e3088a3db4b9b763bdcb80ff1a03f7", "status": "success", "buildurl": "https://github.com/r-universe/ziyili20/actions/runs/26813549884" }, { "r": "4.7.0", "os": "win", "version": "0.1.5", "date": "2026-06-02T10:25:17.000Z", "commit": "6c243aa38c14806fac04fefb5fb164e189fc920a", "fileid": "5fab13c46c260cac76552190adc2c862cbc7710922c784c78a20707889814c66", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ziyili20/actions/runs/26813549884" }, { "r": "4.5.3", "os": "win", "version": "0.1.5", "date": "2026-06-02T10:25:08.000Z", "commit": "6c243aa38c14806fac04fefb5fb164e189fc920a", "fileid": "e5b3fa399d67fad8bc2f61433191d9b8a8da23c98d274c3aa0978e9524691ae9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ziyili20/actions/runs/26813549884" }, { "r": "4.6.0", "os": "win", "version": "0.1.5", "date": "2026-06-02T10:25:09.000Z", "commit": "6c243aa38c14806fac04fefb5fb164e189fc920a", "fileid": "61f91d472c7b9e17b554a46c4cb6fea3d2139cb6f359bf612959d92fd9654179", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ziyili20/actions/runs/26813549884" } ] }