caROC: Continuous Biomarker Evaluation with Adjustment of Covariates

Package: caROC 0.1.5

caROC: Continuous Biomarker Evaluation with Adjustment of Covariates

Compute covariate-adjusted specificity at controlled sensitivity level, or covariate-adjusted sensitivity at controlled specificity level, or covariate-adjust receiver operating characteristic curve, or covariate-adjusted thresholds at controlled sensitivity/specificity level. All statistics could also be computed for specific sub-populations given their covariate values. Methods are described in Ziyi Li, Yijian Huang, Datta Patil, Martin G. Sanda (2021+) "Covariate adjustment in continuous biomarker assessment".

Authors:Ziyi Li

caROC_0.1.5.tar.gz
caROC_0.1.5.zip(r-4.7-any)caROC_0.1.5.zip(r-4.6-any)caROC_0.1.5.zip(r-4.5-any)
caROC_0.1.5.tgz(r-4.6-any)caROC_0.1.5.tgz(r-4.5-any)
caROC_0.1.5.tar.gz(r-4.7-any)caROC_0.1.5.tar.gz(r-4.6-any)
caROC_0.1.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
caROC/json (API)

# Install 'caROC' in R:

install.packages('caROC', repos = c('https://ziyili20.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 360 downloads 9 exports 8 dependencies

Last updated from:6c243aa38c. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	139
source / vignettes	OK	218
linux-release	OK	135
macos-release	OK	171
macos-oldrel	OK	178
windows-devel	OK	95
windows-release	OK	74
windows-oldrel	OK	92
wasm-release	OK	105

Exports:caROC caROC_CB caThreshold plot_caROC plot_caROC_CB plot_sscaROC plot_sscaROC_CB sscaROC sscaROC_CB

Dependencies:lattice MASS Matrix MatrixModels quantreg RColorBrewer SparseM survival

Evaluate continuous biomarkers with caROC

Installation and quick start | Install caROC | How to get help for caROC | Quick start on evaluating continuous biomarker with covariates adjusted | Illustrating the usage of caROC in details | 1. Covariate-adjusted sensitivity at controlled specificity level (or the reverse) | 1.1 Compute pooled sensitivity at controlled specificed level | 1.2 Sub-population specific sensitivity at controlled specificity level | 2. Covariate-adjusted ROC curve | 2.1 Pooled ROC | 2.2 Sub-population specific ROC | 3. Threshold at controlled sensitivity/specificity for given covariate values

Rendered fromcaROC.Rmdusingknitr::rmarkdown

Help page	Topics
Covariate-adjusted ROC	caROC
Get confidence band for covariate-adjusted ROC curve.	caROC_CB
Calculate covariate-adjusted threshold.	caThreshold
Plot covariate-adjusted ROC.	plot_caROC
Plot confidence band of covariate-adjusted ROC.	plot_caROC_CB
Plot covariate-adjusted ROC for specific subpopulations.	plot_sscaROC
Plot confidence band of covariate-adjusted ROC in specific subpopulations.	plot_sscaROC_CB
Covariate-adjusted continuous biomarker evaluations for specific population.	sscaROC
Get confidence band for covariate-adjusted ROC curve for specified sub-population.	sscaROC_CB

Help page

Topics

Covariate-adjusted ROC

caROC

Get confidence band for covariate-adjusted ROC curve.

caROC_CB

Calculate covariate-adjusted threshold.

caThreshold

Plot covariate-adjusted ROC.

plot_caROC

Plot confidence band of covariate-adjusted ROC.

plot_caROC_CB